It makes perfect sense. We are suppose to understand from the first movie that Reese is John's father.
I thought T3 was the official one and the Sarah Conner show was an alternate.
Nope.
Reese goes back in time, fathers John and dies. This creates two possible timelines. The one where Reese goes back, and one where he didn't. The films follow the universe in which Reese did go back and John was born.
and TGO, I'm not really sure which out of T3 and SCC is official canon, but I prefer SCC so I used that.
There HAS to be a starting point somewhere.
There has to be a starting point somewhere. And also, maybe the only reason the John Connor played by Eddie Furlong/Nick Stahl/Christian Bale is named 'John' is because of Reese's influence - this Sarah had more reason to call her son John than the Sarah who mothered the John that Reese knew, so she probably felt compelled to name him what she did. The way I see it, the Furlong/Stahl/Bale version of John is a completely different John than the one Reese knew. Furlong/Stahl/Bale John is....for lack of a better term, an "imitation" of that John. Part of him only wanted to live up to his destiny because of his mom....He was initially reluctant to accept his destiny. Also, he knew about his future self....I can't really say for certain that the other John Connor didn't know about his destiny, because not much has been said about that John's past. But my theory is that the Furlong/Stahl/Bale John ("our" John) is the leader of the human resistance (like the other John), but is actually trying to live up to the other John somewhat. But it doesn't make our John any less of a character if that's the case; in fact, it makes him more interesting. And you can't deny that accepting fate is a major theme of the series (as is "changing" it, if that makes any sense). I'm thinking....so if our John is a "different person" than the one from Reese's future....I'm saying, if Reese and the original Terminator had never been sent back, and our John had been born under different circumstances than that (that being Reese and Sarah's one-night stand)....then maybe he would have eventually became the leader of the resistance anyway, except not being trained by his mom and stuff. I dunno, those are just theories.
Now, I'm going to look back on the series and try to see if I can make any sense of my rambling....I made a timeline that covers the events of TERMINATOR, TERMINATOR 2, CHRONICLES (assuming that TSCC is canon and TERMINATOR 3 isn't), and SALVATION. We'll have to assume that if TERMINATOR 3 isn't canon, then John eventually hooks up with Kate Brewster anyways, because she's his pregnant wife by the time SALVATION comes around. Ahem, the whole timeline should read fairly chronologically for the most part; I've organized it into 3 different timelines, since there are 3 stories on the timeline that feature time travel, that we know of - TERMINATOR, T2, and TSCC. SALVATION is the fourth story, and says that Marcus Wright, the decommissioned Terminator, is from either the past or the future - when I learn what timeline he comes from, I'll update it accordingly. Even though it switches between past and present, it still is basically chronological since future timelines are effected by past ones in this series - So, for example, if you start out in the "first" timeline using Skynet's POV, they send a guy back to the "second" timeline, the guy fails there, so in the "first" timeline, Skynet realizes that there is no change/that John Connor still exists, so they send another guy back....That's just for the first few timelines. So each future timeline - in the case of the first movie, the future timeline is named "first timeline" - basically ends with someone being sent back in time, and the present timeline - in the case of the first movie, it's named "second" timeline - starts with someone arriving from the last timeline. My dates/information about the Sarah Connor Chronicles might be wrong; I don't really watch that show.
FIRST TIMELINE
1959 or 1965
-Sarah Connor born
1984
-John Connor born; biological father unrevealed
-John raised by mother; unknown if father helped raise him
1997
-Skynet goes online and begins learning at a geometric rate
-Judgment Day occurs (Skynet becomes self-aware and initiates nuclear war)
2008
-Kyle Reese born
2029
-Skynet sends T-800 back in time to kill Sarah Connor
-John Connor sends Kyle Reese back in time to protect his mother
SECOND TIMELINE
1984
-T-800 arrives in Los Angeles from first timeline
-Kyle Reese arrives in Los Angeles from first timeline
-Kyle impregnates Sarah
-T-800 kills Kyle before being destroyed by Sarah; its parts are left behind at the Cyberdyne facilities
1985+
-John Connor born to Sarah Connor and Kyle Reese
-Cyberdyne begins researching and developing technology from the T-800's remains
-Sarah placed in mental institution after blowing up computer factory and warning about Judgment Day
-John taken in the care of Todd and Janelle Voight
-Miles Dyson develops neural-net processor using the T-800's CPU
FIRST TIMELINE
2029
-Skynet sends T-1000 back in time to kill John Connor
-John reprograms a T-800 and sends it back in time to protect his younger self
SECOND TIMELINE
1995
-T-800 arrives from first timeline
-T-1000 arrives from first timeline shortly thereafter
-T-800 releases Sarah Connor from the mental institution
-Miles Dyson sacrificies himself to prevent rise of machines, blowing up data on Skynet prototype
-T-800 succeeds in protecting John; kills the T-1000
-Sarah and John destroy remaining Terminator parts, including T-800, to prevent any further research or development
-Sarah and John blamed for Dyson's murder; hide from government
-Derek Reese born
(?) Skynet precursor ("The Turk") developed by former Cyberdyne intern Andrew Goode
2002
-Kyle Reese born
2005
-Sarah Connor dies of cancer
2011
-Skynet goes online
-Judgment Day occurs (Skynet becomes self-aware and initiates nuclear war)
2027
-Skynet sends T-888 back in time to kill John Connor
-John sends unspecified Terminator model back in time to protect his younger self
-John sends four-man resistance team (including Derek Reese) back in time to prevent creation of Skynet
(?) "The Engineer" travels back in time to construct time displacement device and hide it within bank vault
THIRD TIMELINE
1963
-Engineer arrives from second (?) timeline to construct time displacement device and hide it within bank vault
1999
-T-888 arrives from second timeline in order to kill John Connor; masquerades as substitute teacher named Mr. Cromartie
-Resistance Terminator arrives to protect John; poses as high school student ("Cameron Phillips")
-John and Sarah Connor move from Nebraska to New Mexico
-T-888 masquerades as substitute teacher "Mr. Cromartie"
-Cameron and Connors use Engineer's device to evade Cromartie and authorities; Cromartie manages to follow them through time
2007+
-Cameron and Connors arrive via time displacement device (same timeline, as history remains unchanged)
-Cromartie arrives; tracks Connors
-Sarah Connor destroys Turk; Andrew Goode builds second Turk
-Resistance team arrives from second timeline in order to prevent creation of Skynet; Derek Reese kills Goode
-Turk II computer stolen; sold to Zeira Corporation
-Cromartie is destroyed; Cameron is destroyed
-Sarah Connor dies
-John marries Kate Brewster
-Skynet goes online
-Judgment Day occurs (Skynet becomes self-aware and initiates nuclear war)
2018
-Skynet prepares final onslaught
-Marcus Wright, a decommissioned Terminator with amnesia, arrives from another time period
-Marcus befriends John Connor and Kyle Reese